Computational models in immunological methods: an historical review
Stephen J. Merrill
Department of Mathematics, Statistics, and Computer Science, Marquette University,
 Milwaukee, WI 53201-1881 USA
Abstract

        The utilization of computational models in immunology dates from the birth of the science. From the description of antibody-antigen binding to the structural models of receptors, models are utilized to bring fundamental understandings of the processes together with laboratory measurements to uncover implications of these data.

        In this review, an historical view of the role of computational models in the immunology laboratory is presented, and short mathematical descriptions are given of fundamental assays. In addition, the range of current uses of models is explored -- especially as seen through papers which have appeared in the Journal of Immunological Methods from Volume 1 (1971/2) to Volume 208 (1997). Each paper which introduced a new mathematical, statistical, or computer simulation model, or introduced an enhancement to an instrument through a model in those volumes is cited and the type of computational model noted.

Keywords: immunological methods, statistics, simulation, computer model, mathematical model, software, immunological assays
 
Contents
           1. Introduction
           2. Historical Examples
                     complement fixation
                     the precipitin reaction
           3. Modern contributions
                    qualtity (affinity) of antibody 
                    agglutination and hemagglutination
                    immunoassays - quantification of antibody or ligands
                            the Farr assay
                            radioimmunoassays
                            precipitation reaction in gels
                            nephelometry
                            immunofluorescence and fluorescent labeling of cells
                            enzyme immunoassay and ELISA
                    cellular assays
                            cytotoxicity assays
                            migration, migration inhibition, phagocytosis  assays
                            limiting dilution assays
                            basophil degranulation
                            proliferation assays
                            miscellaneous assays
                    other general topics
                            computational approaches to data and design
                            gene sequencing and libraries
                            structures of proteins
                            pcr - the polymerase chain reaction
                            image enhancement
             Acknowledgements
             References